A 1A USB charger operates at 5V, so 1A*5V, charges at 5W (minus losses in the cable).
The actual current that this corresponds to on the battery depends on its current state of charge. At 9V, 5W/9V=0.555A, while at 12.6V, 0.416A. Since they are in series, the same current flows through all of them.
Two ways to think about it:
(1) If you think of 3 cells as just three smaller 18650s (it really is just three smaller LiPos - 3S is how they're arranged), that'll give you an idea. 3-cell 900 mAh oughta charge about the same as one 2700 mAh 18650. (Although, the higher voltage does mean much lower resistive losses, but that's more significant for discharge than charge.)
(2) Work out the watt-hours. If you do this, you can directly compare different batteries of different types as well. Say you have a 3-cell 900 mAh (0.9 Amp-hour) LiPo. LiPo has nominal voltage 3.7V (LiFePO4 batteries are 3.3V), so 0.9 Ah*3.7V = 3.33 (A*V)h = 3.33 Wh. Each cell will give you 3.33 Watt-hours. Three of them, 9.99 Watt-hours. 5 Watt charge speed, 9.99 Wh/5 W is about two hours. EScribe has a calculator for this in Mod->Battery btw. [More advantages of watt-hours instead of amps: If you know you vape at 20W, you know a 10Wh battery'll last you about half an hour continuous, and vaping plugged into a 5W charger, the battery won't be going down as long as you're vaping less than 25% of the time. I wish they sold batteries by Wh instead of mAh. It would make everything easier.]