What was the voltage of the battery that got warm? How old was it and how low do you drain your batteries before changing them out? What charger are you using? Did you check the ohms on your coils to see if maybe you have a short? Over tightening some atomizers onto the mod can bend the wires and create a short.
Are you sure the battery was warm and not the heating up of the atomizer was transferring heat into the tube and such? If the battery did heat up, would recommend recycling it, it is now in a non safe critical chemical state and should not be used again. Battery maintenance, care and proper storing is a must for all vapers, especially those who use mechanicals. YOU are the only safety mechanism that is provided when using a mechanical without a kick or a fuse. Proper care, understanding and knowledge must be attained and used when one owns a mechanical mod.
Vape long and Prosper!!!