From what I was reading, CO2 extraction destroys bacteria but may not affect viral pathogens depending on the exact process used. CO2 extraction to specifically destroy viruses would use considerably higher pressures than the normal extraction process. Other than this non-specific information I doubt that there is any other data out there concerning TMV virus in e-juice.
One might also consider, extracted nicotine is used in some countries as an plant insecticide, but insecticidal nicotine may have antiviral agents added to the mix.
Without following a scientific method and exposing groups of plants to a particular e-juice to see if they get TMV, it would be difficult to say with certainty if is safe or not. And if the plants don't get sick, is it because the extraction process killed the virus, or is it because the tobacco the nicotine was initially extracted from didn't have TMV?

I'm still falling back on "Better safe than sorry."