Then I see no problems.
Like I said before, the dna board doesn't know what battery you are using. It just knows the battery internal resistance, including resistance of mod, and the voltage. If the voltage drops below the cutoff it will shut it down. Also resting voltage after cutoff means nothing. Take a battery with high IR, the resistance to current flow will cause the voltage to sag more under load where as one with a low IR will not sag as much. The only way to know if there is a problem is to fully charge the battery and then discharge until cutoff. Then put it on a hobby charger that display's the amount of mah put back in. My bet is nothing is wrong and you guy's are worried about nothing.
If I can't rely on the battery indicator and it shows me 0% them 50% then 10%, I'm not sure it's "nothing". That and he fact that my 650s last me as long as my 490s....