I know what you mean. I've found its no big deal. However, I try every time anyway. On a 3mm double wick, I start with the point where the R and NR connect between the two wicks. 4 wraps, not too loose and not too tight, and the other end usually lands at the same point on the other side. But again, it really doesn't matter. It's just an OCD thing.
Now that I'm playing with 3.5mm, the game has changed. LOL
I used a 3.5mm silica in the Penelope, and I think it is my favorite so far. It just seems to fit perfectly, and allows me to open it up more without the fear of flooding. How is it working in yours?