The Temp Protection message isn't the sign of a failure (unless it happens almost instantly when firing, then it's a sign of a connection problem, hot leg or resistance mismatch). But to see it hit temp protect a few seconds into a pull is nothing to worry about.
As for coil length, try using 30ga if you want to stick with nickel, 5-6 wraps gets you to 0.1 ohm, 7-8 puts you at about 0.15. And with that few wraps on a Kayfun-esque build deck, there's
plenty of room to get them spaced and not need a jeweler's loupe to inspect the spacing. With the atomizers in your sig, I strongly suggest you sink a few bucks into a spool of 30ga Ni200 before giving up on TC. Titanium on a DNA40 works, but it has its own issues, namely much less accuracy in displayed temps vs actual.
28ga is
really (IMO) crap for a DNA40 because of the large coils needed to get even to the minimum ohm limit, and frankly, it's not
that much easier to work with than 30ga. For a SX350J device and the 0.05 low limit, 28ga makes more sense.
About cleaning, what you're trying to do is remove the oils still on the wire from the production process. Water alone won't cut that residue, nor will friction alone. I keep a bottle of isopropyl alcohol handy, wet a paper towel with it, wipe my cut wire well with it, then go over it again a couple times with a dry towel. Vodka also works, but that's a waste of good medicine. Soap and water work too, but that means getting up and going to a sink.
If you're having trouble wicking through the coil without deforming the coil (and it can be tricky, but gets easier with practice), try the method in the video below, simplifies things a lot and you can pack as much (or as little) wick in the coil as you'd like:
EDIT: I generally run around 500-530F on my Kayfuns, Taifun, and Aqua V2 when I want a warm vape. And keep in mind that VG doesn't boil until over 540F so if you use thick 70%+ VG juices in the 400-450F range, you're simply not getting hot enough to do the juice justice. PG vaporizes at about 390F, so a 50/50 blend at 450-500 is a pretty good setting, and the more PG, the lower you want to set it.