Conventionally speaking, stacked batteries are running in series as CountSmackula's diagram shows and which doubles the voltage... But in all honesty, I can't say if running in parallel, where the amperage is doubled, is any safer or not and would avoid a situation where the batteries could have a cascade failure or not.
While the focus is currently with multi-cell batteries... I believe we are overlooking the point of the lesson these have given us which is that all batteries, single cell and up, need to be treated with the proper respect. As voltage or amperage increases, the risk associated with them increases as well. Make certain the battery or batteries you use are not showing signs of damage, do not overcharge them and do not over discharge them.
While the focus is currently with multi-cell batteries... I believe we are overlooking the point of the lesson these have given us which is that all batteries, single cell and up, need to be treated with the proper respect. As voltage or amperage increases, the risk associated with them increases as well. Make certain the battery or batteries you use are not showing signs of damage, do not overcharge them and do not over discharge them.