You isolate the inputs using a (on off on) switch spdt. The centerpost to your Vin regulator and the outer posts, one to battery (+) and one to 12v source (+). In my large box I used a the large round toggle switch (on off on).
This is my first, so I am having difficulty visualizing the circuit paths. with 3 input sources I will basically have 2 external and on internat so the PT an d ext batt are wired to the same batt position. As they would not be in use at the same time. ON(ext batt/PT), OFF is OFF, ON(int batt)? and they all share common ground?